org.biojava.app
Class BioGetSeq
java.lang.Object
org.biojava.app.BioGetSeq
public class BioGetSeq
- extends Object
BioGetSeq
is a user application for retrieving
sequences from flat file databanks which have been indexed
according to the Open Bioinformatics Database Access (OBDA)
indexing standard. See the BIODATABASE-ACCESS-HOWTO for more
information.
- Author:
- Keith James, Matthew Pocock
- Useage:
java org.biojava.app.BioGetSeq | -d dataSource [-n namespace] [-f format] |
java org.biojava.app.BioGetSeq | -h |
- Option:
-d, --dbname | Specifies a symbolic data source |
-f, --format | The output format {@biojava.default fasta} |
-h, --help | Command-line help |
-n, --namespace | Specifies the namespace within which to search
{@biojava.default ID} |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
BioGetSeq
public BioGetSeq()
main
public static void main(String[] argv)
throws Exception
- Throws:
Exception