Uses of Class
org.biojava.bio.program.das.dasalignment.Alignment

Packages that use Alignment
org.biojava.bio.program.das.dasalignment   
 

Uses of Alignment in org.biojava.bio.program.das.dasalignment
 

Methods in org.biojava.bio.program.das.dasalignment that return Alignment
 Alignment DASAlignmentXMLResponseParser.getAlignment(int position)
          Returns Alignment at position ...
 Alignment[] DASAlignmentClient.getAlignments()
          Returns the alignments.
 Alignment[] DASAlignmentXMLResponseParser.getAlignments()
          Returns the alignments.
 Alignment[] DASAlignmentCall.getAlignments()
          connect to a DAS alignment service and retreive alignments.
 Alignment[] DASAlignmentClient.getAlignments(String query_)
          Returns the alignments.
 Alignment[] DASAlignmentCall.getAlignments(String query)
          connect to a DAS alignment service and retreive data.
 Alignment[] DASAlignmentCall.parseDASResponse(InputStream inStream)
          parse the Response of a DAS ALignment service and return a biojava Alignment object.