ssbind
Class CountSubHits

java.lang.Object
  extended by org.biojava.bio.search.SearchContentAdapter
      extended by ssbind.CountSubHits
All Implemented Interfaces:
org.biojava.bio.search.SearchContentHandler

public class CountSubHits
extends org.biojava.bio.search.SearchContentAdapter

Prints out a count of the total number of sub hits in a report.

Example

 java ProcessBlastReport blast.out ssbind.CountSubHits
 

Author:
Matthew Pocock, Rahul Karnik

Constructor Summary
CountSubHits()
           
 
Method Summary
 void endSearch()
           
 void startSearch()
           
 void startSubHit()
           
 
Methods inherited from class org.biojava.bio.search.SearchContentAdapter
addHitProperty, addSearchProperty, addSubHitProperty, endHeader, endHit, endSubHit, getMoreSearches, setDatabaseID, setMoreSearches, setQueryID, startHeader, startHit
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

CountSubHits

public CountSubHits()
Method Detail

startSearch

public void startSearch()
Specified by:
startSearch in interface org.biojava.bio.search.SearchContentHandler
Overrides:
startSearch in class org.biojava.bio.search.SearchContentAdapter

endSearch

public void endSearch()
Specified by:
endSearch in interface org.biojava.bio.search.SearchContentHandler
Overrides:
endSearch in class org.biojava.bio.search.SearchContentAdapter

startSubHit

public void startSubHit()
Specified by:
startSubHit in interface org.biojava.bio.search.SearchContentHandler
Overrides:
startSubHit in class org.biojava.bio.search.SearchContentAdapter