Uses of Interface
org.biojava.bio.program.homologene.Taxon

Packages that use Taxon
org.biojava.bio.program.homologene Support classes for Homologene data. 
 

Uses of Taxon in org.biojava.bio.program.homologene
 

Classes in org.biojava.bio.program.homologene that implement Taxon
static class Taxon.TaxonStub
           
 

Fields in org.biojava.bio.program.homologene declared as Taxon
static Taxon Taxon.A_THALIANA
           
static Taxon Taxon.B_TAURUS
           
static Taxon Taxon.C_ELEGANS
           
static Taxon Taxon.D_MELANOGASTER
           
static Taxon Taxon.D_RERIO
           
static Taxon Taxon.H_SAPIENS
           
static Taxon Taxon.H_VULGARE
           
static Taxon Taxon.L_ESCULENTUM
           
static Taxon Taxon.M_MUSCULUS
           
static Taxon Taxon.M_TRUNCULATA
           
static Taxon Taxon.O_SATIVA
           
static Taxon Taxon.R_NORVEGICUS
           
static Taxon Taxon.S_SCROFA
           
static Taxon Taxon.T_AESTIVUM
           
static Taxon Taxon.X_LAEVIS
           
static Taxon Taxon.Z_MAYS
           
 

Methods in org.biojava.bio.program.homologene that return Taxon
static Taxon HomologeneTools.createTaxon(int taxonID, String description)
          add a Taxon
 Taxon Orthologue.getTaxon()
          return the Taxon associated with this orthologue
 Taxon SimpleOrthologue.getTaxon()
           
static Taxon HomologeneTools.getTaxon(int taxonID)
          get the Taxon corresponding to this Taxon ID
 

Methods in org.biojava.bio.program.homologene with parameters of type Taxon
 Orthologue SimpleHomologeneDB.createOrthologue(Taxon taxon, String locusID, String homologeneID, String accession)
           
 Orthologue HomologeneDB.createOrthologue(Taxon taxon, String locusID, String homologeneID, String accession)
          Create an orthologue.
 

Constructors in org.biojava.bio.program.homologene with parameters of type Taxon
OrthologueFilter.ByTaxon(Taxon taxon)
           
OrthoPairSetFilter.ByTaxon(Taxon taxon)
           
SimpleOrthologue(Taxon taxon, String locusID, String homologeneID, String accession)