|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use GFFRecord | |
---|---|
org.biojava.bio.program.gff | GFF manipulation. |
Uses of GFFRecord in org.biojava.bio.program.gff |
---|
Classes in org.biojava.bio.program.gff that implement GFFRecord | |
---|---|
class |
SimpleGFFRecord
A no-frills implementation of a GFFRecord. |
Methods in org.biojava.bio.program.gff that return GFFRecord | |
---|---|
protected GFFRecord |
GFFParser.createRecord(GFFDocumentHandler handler,
List aList,
String rest,
String comment)
Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler. |
Methods in org.biojava.bio.program.gff with parameters of type GFFRecord | |
---|---|
boolean |
GFFRecordFilter.accept(GFFRecord record)
Return whether or not to accept record. |
boolean |
GFFRecordFilter.AcceptAll.accept(GFFRecord record)
|
boolean |
GFFRecordFilter.SequenceFilter.accept(GFFRecord record)
|
boolean |
GFFRecordFilter.StrandFilter.accept(GFFRecord record)
|
boolean |
GFFRecordFilter.SourceFilter.accept(GFFRecord record)
|
boolean |
GFFRecordFilter.FeatureFilter.accept(GFFRecord record)
|
boolean |
GFFRecordFilter.FrameFilter.accept(GFFRecord record)
|
boolean |
GFFRecordFilter.NotFilter.accept(GFFRecord record)
|
void |
GFFEntrySet.add(GFFRecord record)
Add a GFFRecord to the end of this set. |
void |
GFFDocumentHandler.recordLine(GFFRecord record)
A record line has been encountered. |
void |
GFFWriter.recordLine(GFFRecord record)
Prints record to the PrintWriter. |
void |
GFFFilterer.recordLine(GFFRecord record)
Only forward the GFFRecords that match a filter. |
Constructors in org.biojava.bio.program.gff with parameters of type GFFRecord | |
---|---|
SimpleGFFRecord(GFFRecord rec)
Create a new SimpleGFFRecord from GFFRecord object |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |