org.biojava.app
Class BioGetSeq

java.lang.Object
  extended by org.biojava.app.BioGetSeq

public class BioGetSeq
extends Object

BioGetSeq is a user application for retrieving sequences from flat file databanks which have been indexed according to the Open Bioinformatics Database Access (OBDA) indexing standard. See the BIODATABASE-ACCESS-HOWTO for more information.

Author:
Keith James, Matthew Pocock
Useage:
java org.biojava.app.BioGetSeq-d dataSource [-n namespace] [-f format]
java org.biojava.app.BioGetSeq-h
Option:
-d, --dbname Specifies a symbolic data source
-f, --format The output format {@biojava.default fasta}
-h, --help Command-line help
-n, --namespace Specifies the namespace within which to search {@biojava.default ID}

Constructor Summary
BioGetSeq()
           
 
Method Summary
static void main(String[] argv)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

BioGetSeq

public BioGetSeq()
Method Detail

main

public static void main(String[] argv)
                 throws Exception
Throws:
Exception