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Packages that use DP | |
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org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
org.biojava.bio.dp.onehead | |
org.biojava.bio.dp.twohead |
Uses of DP in org.biojava.bio.dp |
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Methods in org.biojava.bio.dp that return DP | |
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DP |
DPFactory.createDP(MarkovModel model)
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DP |
DPFactory.DefaultFactory.createDP(MarkovModel model)
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DP |
AbstractTrainer.getDP()
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DP |
TrainingAlgorithm.getDP()
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Constructors in org.biojava.bio.dp with parameters of type DP | |
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AbstractTrainer(DP dp)
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BaumWelchSampler(DP dp)
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BaumWelchTrainer(DP dp)
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Uses of DP in org.biojava.bio.dp.onehead |
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Subclasses of DP in org.biojava.bio.dp.onehead | |
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class |
SingleDP
An implementation of DP that aligns a single sequence against a single model. |
Constructors in org.biojava.bio.dp.onehead with parameters of type DP | |
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SingleDPMatrix(DP dp,
SymbolList symList)
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Uses of DP in org.biojava.bio.dp.twohead |
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Subclasses of DP in org.biojava.bio.dp.twohead | |
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class |
PairwiseDP
Algorithms for dynamic programming (alignments) between pairs of SymbolLists. |
Methods in org.biojava.bio.dp.twohead with parameters of type DP | |
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Class |
DPCompiler.generateBackwardClass(DP dp)
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Class |
DPCompiler.generateForardClass(DP dp)
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Class |
DPCompiler.generateViterbiClass(DP dp)
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CellCalculatorFactory |
DPInterpreter.Maker.make(DP dp)
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CellCalculatorFactory |
CellCalculatorFactoryMaker.make(DP dp)
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CellCalculatorFactory |
DPCompiler.make(DP dp)
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Constructors in org.biojava.bio.dp.twohead with parameters of type DP | |
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DPInterpreter(DP dp)
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PairDPMatrix(DP dp,
SymbolList seq0,
SymbolList seq1)
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