Uses of Interface
org.biojava.bio.dp.ModelTrainer

Packages that use ModelTrainer
org.biojava.bio.dist Probability distributions over Alphabets. 
org.biojava.bio.dp HMM and Dynamic Programming Algorithms. 
 

Uses of ModelTrainer in org.biojava.bio.dist
 

Methods in org.biojava.bio.dist with parameters of type ModelTrainer
 void PairDistribution.registerWithTrainer(ModelTrainer trainer)
          Register this paired distribution with a model trainer.
 

Uses of ModelTrainer in org.biojava.bio.dp
 

Classes in org.biojava.bio.dp that implement ModelTrainer
 class SimpleModelTrainer
           
 

Methods in org.biojava.bio.dp with parameters of type ModelTrainer
 void WMAsMM.registerWithTrainer(ModelTrainer modelTrainer)
           
 void SimpleEmissionState.registerWithTrainer(ModelTrainer trainer)
           
 void Trainable.registerWithTrainer(ModelTrainer mt)
          Perform any registration that is necessary with mt.
protected abstract  double AbstractTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)
           
protected  double BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)
           
protected  double BaumWelchTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)
           
protected  double BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList, ScoreType scoreType)