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public interface AminoAcid
AminoAcid inherits most from Hetatom. Adds a few AminoAcid specific methods.
Method Summary | |
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Character |
getAminoType()
returns the name of the AA, in single letter code. |
Atom |
getC()
get C atom. |
Atom |
getCA()
get CA atom. |
Atom |
getCB()
get CB atom. |
Atom |
getN()
get N atom. |
Atom |
getO()
get O atom. |
Map |
getSecStruc()
get secondary structure data . |
void |
setAminoType(Character aa)
set the name of the AA, in single letter code . |
void |
setSecStruc(Map secstr)
Specifies the secondary structure as a Map. |
String |
toString()
string representation. |
Methods inherited from interface org.biojava.bio.structure.Group |
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addAtom, clearAtoms, clone, getAtom, getAtom, getAtoms, getParent, getPDBCode, getPDBName, getProperties, getProperty, getType, has3D, hasAminoAtoms, hasAtom, iterator, setParent, setPDBCode, setPDBFlag, setPDBName, setProperties, setProperty, size |
Method Detail |
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void setSecStruc(Map secstr)
secstr
- a Map object specifying the sec strucgetSecStruc()
Map getSecStruc()
setSecStruc(java.util.Map)
Atom getN() throws StructureException
StructureException
- ...Atom getCA() throws StructureException
StructureException
- ...Atom getC() throws StructureException
StructureException
- ...Atom getO() throws StructureException
StructureException
- ...Atom getCB() throws StructureException
StructureException
- ...Character getAminoType()
setAminoType(java.lang.Character)
void setAminoType(Character aa)
aa
- a Character object specifying the amino type valuegetAminoType()
String toString()
toString
in class Object
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