Last Modified
2013-07-16 07:53:53 +0000
Requires
  • bio/command

Description

bio/io/ensembl.rb - An Ensembl Genome Browser client.

Copyright

Copyright (C) 2006 Mitsuteru C. Nakao <n@bioruby.org>

License

The Ruby License

$Id:$

Description

Client classes for Ensembl Genome Browser.

Examples

human = Bio::Ensembl.new('Homo_sapiens')
seq = human.exportview(1, 1000, 100000)
gff = human.exportview(1, 1000, 100000, ['gene', 'variation', 'genscan'])

human = Bio::Ensembl.human
seq = human.exportview(1, 1000, 100000)
gff = human.exportview(1, 1000, 100000, ['gene'])

seq = Bio::Ensembl.human.exportview(1, 1000, 100000)
gff = Bio::Ensembl.human.exportview(1, 1000, 100000, ['gene', 'variation', 'genscan'])

References