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Packages that use IgnoreRecordException | |
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org.biojava.bio.program.gff | GFF manipulation. |
org.biojava.bio.program.gff3 | Support for reading and writing GFF3. |
Uses of IgnoreRecordException in org.biojava.bio.program.gff |
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Methods in org.biojava.bio.program.gff that throw IgnoreRecordException | |
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protected GFFRecord |
GFFParser.createRecord(GFFDocumentHandler handler,
List aList,
String rest,
String comment)
Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler. |
int |
GFFErrorHandler.invalidEnd(String token)
The `end' field of the GFF entry was not a valid value. |
int |
GFFErrorHandler.SkipRecordErrorHandler.invalidEnd(String token)
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int |
GFFErrorHandler.invalidFrame(String token)
The `frame' field of the GFF entry was not a valid value. |
int |
GFFErrorHandler.SkipRecordErrorHandler.invalidFrame(String token)
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double |
GFFErrorHandler.invalidScore(String token)
The `score' field of the GFF entry was not a valid value. |
double |
GFFErrorHandler.SkipRecordErrorHandler.invalidScore(String token)
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int |
GFFErrorHandler.invalidStart(String token)
The `start' field of the GFF entry was not a valid value. |
int |
GFFErrorHandler.SkipRecordErrorHandler.invalidStart(String token)
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StrandedFeature.Strand |
GFFErrorHandler.invalidStrand(String token)
The `strand' field of the GFF entry was not a valid value. |
StrandedFeature.Strand |
GFFErrorHandler.SkipRecordErrorHandler.invalidStrand(String token)
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Uses of IgnoreRecordException in org.biojava.bio.program.gff3 |
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Methods in org.biojava.bio.program.gff3 that throw IgnoreRecordException | |
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protected GFF3Record |
GFF3Parser.createRecord(GFF3DocumentHandler handler,
List aList,
String rest,
String comment,
Ontology ontology,
Ontology fallBack)
Actually turns a list of tokens, some value string and a comment into a GFF3Record and informs handler. |
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