hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /Users/nakao/Sites/iprscan/data/Pfam
Sequence file:            /Users/nakao/Sites/iprscan/tmp/20050517/iprscan-20050517-16244071/chunk_1/iprscan-20050517-16244071.nocrc
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Query sequence: 104K_THEPA
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04385.4 Domain of unknown function, DUF529             259.3    6.6e-75   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04385.4   1/4      36   111 ..     1    80 []    65.0    2e-16
PF04385.4   2/4     149   224 ..     1    80 []    64.7  2.5e-16
PF04385.4   3/4     265   343 ..     1    80 []    64.6  2.7e-16
PF04385.4   4/4     379   456 ..     1    80 []    65.0    2e-16

Alignments of top-scoring domains:
PF04385.4: domain 1 of 4, from 36 to 111: score 65.0, E = 2e-16
                   *->tLDlndtgstlkqfdykvalngdivvtytpkpGvkftkitdGnevvW
                      t+D+n++++    f  +v+++g+++ + ++ ++v+++++++Gn+v+W
  104K_THEPA    36    TFDINSNQTG-PAFLTAVEMAGVKYLQVQHGSNVNIHRLVEGNVVIW 81   

                   eseddpefglivtlsfyldsnkfLvlllintak<-*
                   e++   + +l++ ++++++++++++++++ +++   
  104K_THEPA    82 ENA---STPLYTGAIVTNNDGPYMAYVEVLGDP    111  

PF04385.4: domain 2 of 4, from 149 to 224: score 64.7, E = 2.5e-16
                   *->tLDlndtgstlkqfdykvalngdivvtytpkpGvkftkitdGnevvW
                      +L++ ++ +++k+ + ++a+ng ++vt++p++G+ +++++++n++++
  104K_THEPA   149    SLNMAFQLENNKYEVETHAKNGANMVTFIPRNGHICKMVYHKNVRIY 195  

                   eseddpefglivtlsfyldsnkfLvlllintak<-*
                   ++     ++++vt++++++ +++L+l+++ +     
  104K_THEPA   196 KA----TGNDTVTSVVGFFRGLRLLLINVFSID    224  

PF04385.4: domain 3 of 4, from 265 to 343: score 64.6, E = 2.7e-16
                   *->tLDlndtgstlkqfdykvalngdivvtytpkpGvkftkitdGnevvW
                       +Dl+ +++ +++f+ + a+++ ++++++p++G+++tk++dG++v++
  104K_THEPA   265    PVDLDIKDIDYTMFHLADATYHEPCFKIIPNTGFCITKLFDGDQVLY 311  

                   eseddpefglivtlsfyldsnkfLvlllintak<-*
                   es+ + + ++i  +++y+++n ++++l++n+++   
  104K_THEPA   312 ESFNP-LIHCINEVHIYDRNNGSIICLHLNYSP    343  

PF04385.4: domain 4 of 4, from 379 to 456: score 65.0, E = 2e-16
                   *->tLDlndtgstlkqfdykvalngdivvty.tpkpGvkftkitdGnevv
                      +LD+n  ++++k+ +++  +n d  +t+ tp+p+  + +++dG+ev+
  104K_THEPA   379    ELDVN--FISDKDLYVAALTNADLNYTMvTPRPHRDVIRVSDGSEVL 423  

                   WeseddpefglivtlsfyldsnkfLvlllintak<-*
                   W++e+  ++ l++++++++d++ +Lv+l+i++     
  104K_THEPA   424 WYYEGL-DNFLVCAWIYVSDGVASLVHLRIKDRI    456  

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