ApplicationController
# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb, line 135 def commands @bioruby_commands = Bio::Shell.private_instance_methods.sort end
# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb, line 22 def evaluate if local_request? begin @script = params[:script].strip # write out to history Bio::Shell.store_history(@script) # evaluate ruby script @result = eval(@script, Bio::Shell.cache[:binding]) # *TODO* need to handle with output of print/puts/p/pp etc. here @output = nil rescue @result = $! @output = nil end else @result = SECURITY_NOTICE @output = nil end @number = Bio::Shell.cache[:results].store(@script, @result, @output) render :update do |page| render_log(page) end end
# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb, line 139 def history @history = File.readlines(Bio::Shell.history_file) end
# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb, line 16 def index unless local_request? flash[:notice] = SECURITY_NOTICE end end
# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb, line 64 def list_classes number = params[:number].to_i script, result, output = Bio::Shell.cache[:results].restore(number) class_name = result.class @class = class_name @classes = [] loop do @classes.unshift(class_name) if class_name == Object break else class_name = class_name.superclass end end render :update do |page| page.replace_html "classes_#{number}", :partial => "classes" page.visual_effect :toggle_blind, "classes_#{number}", :duration => 0.5 end end
# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb, line 51 def list_methods number = params[:number].to_i script, result, output = Bio::Shell.cache[:results].restore(number) @class = result.class @methods = (result.methods - HIDE_METHODS).sort render :update do |page| page.replace_html "methods_#{number}", :partial => "methods" page.visual_effect :toggle_blind, "methods_#{number}", :duration => 0.5 end end
# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb, line 86 def list_modules number = params[:number].to_i script, result, output = Bio::Shell.cache[:results].restore(number) @class = result.class @modules = result.class.included_modules - HIDE_MODULES render :update do |page| page.replace_html "modules_#{number}", :partial => "modules" page.visual_effect :toggle_blind, "modules_#{number}", :duration => 0.5 end end
# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb, line 99 def reload_script number = params[:number].to_i script, result, output = Bio::Shell.cache[:results].restore(number) render :update do |page| page.replace_html :script, script end end
# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb, line 109 def results if Bio::Shell.cache[:results].number > 0 limit = params[:limit].to_i max_num = Bio::Shell.cache[:results].number min_num = [ max_num - limit + 1, 1 ].max min_num = 1 if limit == 0 render :update do |page| # delete all existing results in the current DOM for clean up page.select(".log").each do |element| #page.hide element page.remove element end # add selected results to the current DOM min_num.upto(max_num) do |@number| #page.show "log_#{@number}" @script, @result, @output = Bio::Shell.cache[:results].restore(@number) if @script render_log(page) end end end end end
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