Last Modified
2013-06-25 13:42:59 +0000
Requires
  • uri
  • cgi
  • bio/command

Description

bio/io/biofetch.rb - BioFetch access module

Copyright

Copyright (C) 2002, 2005 Toshiaki Katayama <k@bioruby.org>, Copyright (C) 2006 Jan Aerts <jan.aerts@bbsrc.ac.uk>

License

The Ruby License

$Id:$

DESCRIPTION

Using BioRuby BioFetch server

br_server = Bio::Fetch.new()
puts br_server.databases
puts br_server.formats('embl')
puts br_server.maxids

Using EBI BioFetch server

ebi_server = Bio::Fetch.new('http://www.ebi.ac.uk/cgi-bin/dbfetch')
puts ebi_server.fetch('embl', 'J00231', 'raw')
puts ebi_server.fetch('embl', 'J00231', 'html')
puts Bio::Fetch.query('genbank', 'J00231')
puts Bio::Fetch.query('genbank', 'J00231', 'raw', 'fasta')