Last Modified
2013-06-25 13:42:59 +0000
Requires
  • bio

Description

bio/appl/blat/report.rb - BLAT result parser

Copyright

Copyright (C) 2004, 2006, 2008 Naohisa Goto <ng@bioruby.org>

License

The Ruby License

$Id:$

BLAT result parser (psl / pslx format).

Important Notes

In BLAT results, the start position of a sequnece is numbered as 0. On the other hand, in many other homology search programs, the start position of a sequence is numbered as 1. To keep compatibility, the BLAT parser adds 1 to every position number.

References