Last Modified
2013-06-25 13:42:59 +0000
Requires
  • tempfile
  • bio/command
  • bio/db/fasta
  • bio/io/flatfile

Description

bio/appl/mafft.rb - MAFFT wrapper class

Copyright

Copyright (C) 2003 GOTO Naohisa <ngoto@gen-info.osaka-u.ac.jp>

License

The Ruby License

$Id: mafft.rb,v 1.18 2007/07/16 12:27:29 ngoto Exp $

Bio::MAFFT is a wrapper class to execute MAFFT. MAFFT is a very fast multiple sequence alignment software.

Important Notes

Though Bio::MAFFT class currently supports only MAFFT version 3, you can use MAFFT version 5 because the class is a wrapper class.

References