Last Modified
  2013-07-29 20:46:05 +0000
Requires
  - bio/appl/hmmer

## Description

# bio/appl/hmmer/report.rb - hmmsearch, hmmpfam parserer

Copyright | Copyright (C) 2002 Hiroshi Suga <suga@biophys.kyoto-u.ac.jp>,
Copyright | Copyright (C) 2005 Masashi Fujita <fujita@kuicr.kyoto-u.ac.jp>
License | The Ruby License

$Id:$

## Description

Parser class for hmmsearch and hmmpfam in the HMMER package.

## Examples

    #for multiple reports in a single output file (example.hmmpfam)
    Bio::HMMER.reports(File.read("example.hmmpfam")) do |report|
      report.program['name']
      report.parameter['HMM file']
      report.query_info['Query sequence']
      report.hits.each do |hit|
        hit.accession
        hit.description
        hit.score
        hit.evalue
        hit.hsps.each do |hsp|
          hsp.accession
          hsp.domain
          hsp.evalue
          hsp.midline
      end
    end

## References

- HMMER hmmer.wustl.edu/