Last Modified
  2013-07-29 20:46:05 +0000
Requires
  - bio/io/flatfile/indexer
  - tempfile

## Description

# bio/io/flatfile/index.rb - OBDA flatfile index

Copyright | Copyright (C) 2002 GOTO Naohisa <ng@bioruby.org>
License | The Ruby License

    $Id: index.rb,v 1.19 2007/04/05 23:35:41 trevor Exp $

# About Bio::FlatFileIndex

Please refer documents of following classes. Classes/modules marked '#' are internal use only.

## Classes/modules in index.rb

- class Bio::FlatFileIndex

- class Bio::FlatFileIndex::Results

- module Bio::FlatFileIndex::DEBUG

- module Bio::FlatFileIndex::Template

- class Bio::FlatFileIndex::Template::NameSpace

- class Bio::FlatFileIndex::FileID

- class Bio::FlatFileIndex::FileIDs

- module Bio::FlatFileIndex::Flat_1

- class Bio::FlatFileIndex::Flat_1::Record

- class Bio::FlatFileIndex::Flat_1::FlatMappingFile

- class Bio::FlatFileIndex::Flat_1::PrimaryNameSpace

- class Bio::FlatFileIndex::Flat_1::SecondaryNameSpace

- class Bio::FlatFileIndex::NameSpaces

- class Bio::FlatFileIndex::DataBank

## Classes/modules in indexer.rb

- module Bio::FlatFileIndex::Indexer

- class Bio::FlatFileIndex::Indexer::NameSpace

- class Bio::FlatFileIndex::Indexer::NameSpaces

- module Bio::FlatFileIndex::Indexer::Parser

- class Bio::FlatFileIndex::Indexer::Parser::TemplateParser

- class Bio::FlatFileIndex::Indexer::Parser::GenBankParser

- class Bio::FlatFileIndex::Indexer::Parser::GenPeptParser

- class Bio::FlatFileIndex::Indexer::Parser::EMBLParser

- class Bio::FlatFileIndex::Indexer::Parser::SPTRParser

- class Bio::FlatFileIndex::Indexer::Parser::FastaFormatParser

- class Bio::FlatFileIndex::Indexer::Parser::MaXMLSequenceParser

- class Bio::FlatFileIndex::Indexer::Parser::MaXMLClusterParser

- class Bio::FlatFileIndex::Indexer::Parser::BlastDefaultParser

- class Bio::FlatFileIndex::Indexer::Parser::PDBChemicalComponentParser

## Classes/modules in bdb.rb

- module Bio::FlatFileIndex::BDBDefault

- class Bio::FlatFileIndex::BDBWrapper

- module Bio::FlatFileIndex::BDB_1

- class Bio::FlatFileIndex::BDB_1::BDBMappingFile

- class Bio::FlatFileIndex::BDB_1::PrimaryNameSpace

- class Bio::FlatFileIndex::BDB_1::SecondaryNameSpace

# References

- ((<URL:obda.open-bio.org/>))

- ((<URL:cvs.open-bio.org/cgi-bin/viewcvs/viewcvs.cgi/obda-specs/?cvsroot=obf-common>))