bio-0.5.3: A bioinformatics library

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LanguageHaskell98

Bio.Alignment.PSL

Description

This models the PSL format used by e.g. the alignment tool BLAT. It is a simple, textual representation of (spliced) alignments, with tab-separated fields.

See http:/genome.ucsc.eduFAQ/FAQformat#format2 for details.

Documentation

data PSL

Instances

writePSL :: FilePath -> [PSL] -> IO ()