Safe Haskell | Safe-Inferred |
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Language | Haskell98 |
Bio.Sequence.AminoProperties
Description
Encodes a table of amino acid properties. Based on Livingstone & Barton, CABIOS, 9, 745-756, 1993, as seen at: http:/www.compbio.dundee.ac.ukuserws-dev1jalviewlatesthelphtmlmisc/aaproperties.html NB: based on the graphic, not the table (in which P is polar, but T is not) |
- type AAProp = Amino -> Bool
- oneOf :: [Amino] -> Amino -> Bool
- or :: (t -> Bool) -> (t -> Bool) -> t -> Bool
- aliphatic :: AAProp
- positive :: AAProp
- negative :: AAProp
- charged :: AAProp
- tiny :: AAProp
- small :: AAProp
- polar :: AAProp
- hydrophobic :: AAProp
- aromatic :: AAProp
- hydropathy :: Amino -> Double
- mass :: Amino -> Double
- helixP :: Amino -> Double
- strandP :: Amino -> Double
Documentation
hydropathy :: Amino -> Double
The propensities for forming secondary structures From Zvelebil and Baum: Understanding Bioinformatics, Chapter 11 citing Chou and Fasman. Today, more complex methods like GOR are recommended instead.