Class Specialization
Dna5Q
Alphabet for DNA plus phred quality including 'N' character.

Simple Type

SimpleType

Dna5Q

Dna5Q
Remarks
The ValueSize of Dna5Q is 5. The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'T' = 3. The 'N' character ("unkown nucleotide") is encoded by 4.
Objects of type Dna5 can be converted to various other types and vice versa.
Dna5Q is typedef for SimpleType<char,Dna5Q_>, while Dna5Q_ is a helper specialization tag class.
Specialization of
SimpleType
Implements
Simple Type
Metafunctions

IsSimple | Tests type to be simple. (SimpleType)
Spec | The spec of a class. (SimpleType)
Value | Type of the items in the container. (SimpleType)

Functions

assign | Assigns one object to another object. (SimpleType)
assign | Assigns one object to another object. (SimpleType)
assignQualityValue | Assign quality to a character from an alphabet with integrated quality.
ordValue | Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType)

See Also
DnaQ, ValueSize
SeqAn - Sequence Analysis Library - www.seqan.de

Page built @2012/03/14 16:34:51