adj_pvalues | An S4 class to represent the ihw output. |
adj_pvalues-method | An S4 class to represent the ihw output. |
alpha | An S4 class to represent the ihw output. |
alpha-method | An S4 class to represent the ihw output. |
as.data.frame-method | An S4 class to represent the ihw output. |
as.data.frame_ihwResult | An S4 class to represent the ihw output. |
covariates | An S4 class to represent the ihw output. |
covariates-method | An S4 class to represent the ihw output. |
covariate_type | An S4 class to represent the ihw output. |
covariate_type-method | An S4 class to represent the ihw output. |
get_bh_threshold | Data-driven threshold of Benjamini Hochberg Procedure |
groups_by_filter | Stratify hypotheses based on increasing value of the covariate |
groups_factor | An S4 class to represent the ihw output. |
groups_factor-method | An S4 class to represent the ihw output. |
ihw | ihw: Main function for Independent Hypothesis Weighting |
ihw.default | ihw: Main function for Independent Hypothesis Weighting |
ihw.DESeqResults | ihw.DESeqResults: IHW method dispatching on DESeqResults objects |
ihw.formula | ihw: Main function for Independent Hypothesis Weighting |
ihwResult | An S4 class to represent the ihw output. |
ihwResult-class | An S4 class to represent the ihw output. |
m_groups | An S4 class to represent the ihw output. |
m_groups-method | An S4 class to represent the ihw output. |
nbins | An S4 class to represent the ihw output. |
nbins-method | An S4 class to represent the ihw output. |
nfolds | An S4 class to represent the ihw output. |
nfolds-method | An S4 class to represent the ihw output. |
nrow-method | An S4 class to represent the ihw output. |
plot-method | Plot functions for IHW |
pvalues | An S4 class to represent the ihw output. |
pvalues-method | An S4 class to represent the ihw output. |
regularization_term | An S4 class to represent the ihw output. |
regularization_term-method | An S4 class to represent the ihw output. |
rejected_hypotheses | An S4 class to represent the ihw output. |
rejected_hypotheses-method | An S4 class to represent the ihw output. |
rejections | An S4 class to represent the ihw output. |
rejections-method | An S4 class to represent the ihw output. |
show-method | An S4 class to represent the ihw output. |
thresholds | An S4 class to represent the ihw output. |
thresholds-method | An S4 class to represent the ihw output. |
weighted_pvalues | An S4 class to represent the ihw output. |
weighted_pvalues-method | An S4 class to represent the ihw output. |
weights-method | An S4 class to represent the ihw output. |