Independent Hypothesis Weighting


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Documentation for package ‘IHW’ version 1.14.0

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adj_pvalues An S4 class to represent the ihw output.
adj_pvalues-method An S4 class to represent the ihw output.
alpha An S4 class to represent the ihw output.
alpha-method An S4 class to represent the ihw output.
as.data.frame-method An S4 class to represent the ihw output.
as.data.frame_ihwResult An S4 class to represent the ihw output.
covariates An S4 class to represent the ihw output.
covariates-method An S4 class to represent the ihw output.
covariate_type An S4 class to represent the ihw output.
covariate_type-method An S4 class to represent the ihw output.
get_bh_threshold Data-driven threshold of Benjamini Hochberg Procedure
groups_by_filter Stratify hypotheses based on increasing value of the covariate
groups_factor An S4 class to represent the ihw output.
groups_factor-method An S4 class to represent the ihw output.
ihw ihw: Main function for Independent Hypothesis Weighting
ihw.default ihw: Main function for Independent Hypothesis Weighting
ihw.DESeqResults ihw.DESeqResults: IHW method dispatching on DESeqResults objects
ihw.formula ihw: Main function for Independent Hypothesis Weighting
ihwResult An S4 class to represent the ihw output.
ihwResult-class An S4 class to represent the ihw output.
m_groups An S4 class to represent the ihw output.
m_groups-method An S4 class to represent the ihw output.
nbins An S4 class to represent the ihw output.
nbins-method An S4 class to represent the ihw output.
nfolds An S4 class to represent the ihw output.
nfolds-method An S4 class to represent the ihw output.
nrow-method An S4 class to represent the ihw output.
plot-method Plot functions for IHW
pvalues An S4 class to represent the ihw output.
pvalues-method An S4 class to represent the ihw output.
regularization_term An S4 class to represent the ihw output.
regularization_term-method An S4 class to represent the ihw output.
rejected_hypotheses An S4 class to represent the ihw output.
rejected_hypotheses-method An S4 class to represent the ihw output.
rejections An S4 class to represent the ihw output.
rejections-method An S4 class to represent the ihw output.
show-method An S4 class to represent the ihw output.
thresholds An S4 class to represent the ihw output.
thresholds-method An S4 class to represent the ihw output.
weighted_pvalues An S4 class to represent the ihw output.
weighted_pvalues-method An S4 class to represent the ihw output.
weights-method An S4 class to represent the ihw output.