libpappsomspp
Library for mass spectrometry
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peptidestrparser.h
Go to the documentation of this file.
1
2/*******************************************************************************
3 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24
25#pragma once
26
27#include "peptide.h"
28#include <QRegularExpression>
29
30namespace pappso
31{
33{
34 public:
35 static PeptideSp parseString(const QString &pepstr);
36 static NoConstPeptideSp parseNoConstString(const QString &pepstr);
37
38 private:
39 static void parseStringToPeptide(const QString &pepstr, Peptide &peptide);
40
41 private:
42 static QRegularExpression _mod_parser;
43 static QRegularExpression _rx_psimod;
44 static QRegularExpression _rx_modmass;
45
46 // static QMutex _mutex;
47};
48} // namespace pappso
static QRegularExpression _rx_psimod
static QRegularExpression _rx_modmass
static QRegularExpression _mod_parser
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
std::shared_ptr< const Peptide > PeptideSp
std::shared_ptr< Peptide > NoConstPeptideSp
Definition peptide.h:97
peptide model